M. T. Abreu-martin and S. R. Targan, Regulation of Immune Responses of the Intestinal Mucosa, Critical Reviews??? in Immunology, vol.16, issue.3, pp.277-309, 1996.
DOI : 10.1615/CritRevImmunol.v16.i3.30

R. D. Berg, The indigenous gastrointestinal microflora, Trends in Microbiology, vol.4, issue.11, pp.430-435, 1996.
DOI : 10.1016/0966-842X(96)10057-3

P. Boisot, D. Licois, and T. Gidenne, Une restriction alimentaire réduit l'impact d'une reproduction expérimentale de l'entéropathie épizootique (EEL) chez le lapin en croissance, Proc. 10 ème J. Rech. Cunicoles, pp.19-20, 2003.

F. W. Brambell, THE TRANSMISSION OF IMMUNITY FROM MOTHER TO YOUNG AND THE CATABOLISM OF IMMUNOGLOBULINS, The Lancet, vol.288, issue.7473, pp.1087-1093, 1966.
DOI : 10.1016/S0140-6736(66)92190-8

T. Gidenne, High throughput 16S-DNA sequencing for phylogenetic affiliation of the caecal bacterial community in the rabbit -Impact of the hygiene of housing and of the intake limitation strategy, 2013.

T. H. Ermak, H. R. Bhagat, and J. Pappo, Lymphocyte compartments in antigensampling regions of rabbits mucosal lymphoïds organs, Am. J. Trop. Med. Hyg, vol.50, pp.14-28, 1994.

C. A. Feghali and T. M. Wright, Cytokines in acute and chronic inflammation, Front. Biosci, vol.2, pp.12-26, 1997.

M. Feldmann and J. Saklatvala, Proinflammatory cytokines, Cytokine Ref, vol.1, pp.291-305, 2001.

L. Fortun-lamothe and F. Drouet-viard, REVIEW: II - DIET AND IMMUNITY : CURRENT STATE OF KNOWLEDGE AND RESEARCH PROSPECTS FOR THE RABBIT, World Rabbit Science, vol.10, issue.1, pp.25-39, 2002.
DOI : 10.4995/wrs.2002.473

L. Fortun-lamothe and S. Boullier, A review on the interactions between gut microflora and digestive mucosal immunity. Possible ways to improve the health of rabbits, Livestock Science, vol.107, issue.1, pp.1-18, 2007.
DOI : 10.1016/j.livsci.2006.09.005

T. Gidenne, S. Combes, D. Licois, R. Carabano, I. Badiola et al., The caecal ecosystem and the nutrition of the rabbit : Interaction with digestive health, INRA Productions Animales, vol.21, pp.239-249, 2008.

T. Gidenne and A. Feugier, Feed restriction strategy in the growing rabbit, 2009.

T. Gidenne, S. Combes, and L. Fortun-lamothe, Restreindre l'ingestion du jeune lapin : De nouvelles stratégies pour renforcer sa santé digestive et améliorer son efficacité alimentaire, INRA Prod. Anim, vol.25, pp.323-336, 2012.

P. H. Gouet and G. Fonty, Changes in the digestive microflora of holoxenic * rabbits from birth until adulthood, Annales de Biologie Animale Biochimie Biophysique, vol.19, issue.3A, pp.553-556, 1979.
DOI : 10.1051/rnd:19790501

URL : https://hal.archives-ouvertes.fr/hal-00897477

D. J. Griffiths, C. Voisset, P. Venables, and R. A. Weiss, Novel Endogenous Retrovirus in Rabbits Previously Reported as Human Retrovirus 5, Journal of Virology, vol.76, issue.14, pp.7094-7102, 2002.
DOI : 10.1128/JVI.76.14.7094-7102.2002

F. Guarner and J. R. Malagelada, Gut flora in health and disease, The Lancet, vol.361, issue.9356, pp.512-519, 2003.
DOI : 10.1016/S0140-6736(03)12489-0

W. Hein, Organization of Mucosal Lymphoid Tissue, Curr. Top. Microbiol. Immunol, vol.236, pp.1-15, 1999.
DOI : 10.1007/978-3-642-59951-4_1

L. V. Hooper and J. I. Gordon, Commensal Host-Bacterial Relationships in the Gut, Science, vol.292, issue.5519, pp.1115-1118, 2001.
DOI : 10.1126/science.1058709

L. V. Hooper, Bacterial contributions to mammalian gut development, Trends in Microbiology, vol.12, issue.3, pp.129-134, 2004.
DOI : 10.1016/j.tim.2004.01.001

D. Lanning, X. Zhu, S. K. Zhai, and K. L. Knight, Development of the antibody repertoire in rabbit: gut-associated lymphoid tissue, microbes, and selection, Immunological Reviews, vol.175, issue.1, pp.214-228, 2000.
DOI : 10.1111/j.1600-065X.2000.imr017516.x

D. Lanning, X. Zhu, S. K. Zhai, and K. L. Knight, Development of the antibody repertoire in rabbit: gut-associated lymphoid tissue, microbes, and selection, Immunological Reviews, vol.175, issue.1, pp.214-228, 2009.
DOI : 10.1111/j.1600-065X.2000.imr017516.x

K. J. Livak and T. D. Schmittgen, Analysis of relative gene expression data using real time quantitative PCR and the 2^ -??Ct method, pp.25-402, 2001.

R. I. Mackie and B. A. White, Gastrointestinal Microbiology. Chapman and Hall Microbiology series 1997, 1997.

R. G. Mage, Diversification of rabbit VH genes by gene-conversion-like and hypermutation mechanisms, Immunological Reviews, vol.27, issue.1, pp.49-54, 1998.
DOI : 10.1084/jem.183.5.2119

O. Martin, Réponses physiologiques et immunitaires du lapereau en situation d'ingestion limitée ou d'hygiène degradée, 2011.

K. Massip, S. Combes, L. Cauquil, O. Zemb, and T. Gidenne, High throughput 16S-DNA sequencing for phylogenetic affiliation of the caecal bacterial community in the rabbit : Impact of the hygiene of housing and of the intake level, 2012.

B. L. Mclamb, A. J. Gibson, E. L. Overman, C. Stahl, and A. J. Moeser, Early Weaning Stress in Pigs Impairs Innate Mucosal Immune Responses to Enterotoxigenic E. coli Challenge and Exacerbates Intestinal Injury and Clinical Disease, PLoS ONE, vol.35, issue.4, pp.1-12, 2013.
DOI : 10.1371/journal.pone.0059838.g008

I. Gill, B. P. Pluske, J. R. Mayer, C. D. Musk, C. C. Kelly et al., Environmentallyacquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces, BMC Biology, vol.7, p.79, 2009.

O. De-l-'elevage, Le marché des produits laitiers, carnés et avicoles en 2008. Office national interprofessionnel de l'élevage et de ses productions, 2008.

L. Montagne, Feed restriction applied after weaning has different effects on pig performance and health depending on the sanitary conditions, J. of Anim. Sci, vol.90, pp.4866-4875, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00841108

E. Poitras and A. Houde, La PCR en temps réel : principes et applications, Reviews in Biology and Biotechnology, vol.2, issue.2, pp.2-11, 2002.

K. J. Rhee, P. Sethupathi, A. Driks, D. K. Lanning, and K. L. Knight, Role of Commensal Bacteria in Development of Gut-Associated Lymphoid Tissues and Preimmune Antibody Repertoire, The Journal of Immunology, vol.172, issue.2, pp.1118-1124, 2004.
DOI : 10.4049/jimmunol.172.2.1118

J. D. Lambris and P. A. Ward, Protective effects of IL-6 blockade in sepsis are linked to reduced C5a receptor expression, J. Immunol, vol.170, pp.503-507, 2003.

D. C. Savage, Microbial Ecology of the Gastrointestinal Tract, Annual Review of Microbiology, vol.31, issue.1, pp.107-133, 1977.
DOI : 10.1146/annurev.mi.31.100177.000543

P. Schnupf and P. J. Sansonetti, Quantitative RT-PCR profiling of the Rabbit Immune Response: Assessment of Acute Shigella flexneri Infection, PLoS ONE, vol.12, issue.6, p.36446, 2012.
DOI : 10.1371/journal.pone.0036446.t001

K. E. Shroff, K. Meslin, and J. J. Cebra, Commensal enteric bacteria engender a self-limiting humoral mucosal immune response while permanently colonizing the gut, Infect. Immun, vol.63, p.3904, 1995.

S. Biological-inc, T. S. Stappenbeck, L. V. Hooper, and J. I. Gordon, Cytokine Network. http://www.sinobiological.com/Cytokine- Network-a-1312 Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells, Proc. Natl. Acad. Sci. USA., 99, p.15451, 2002.

M. Vajdy, P. Sethupathi, and K. L. Knight, Dependence of antibody somatic diversification on gut-associated lymphoid tissue in rabbits, J. Immunol, vol.160, p.2725, 1998.

T. Vanderpoll, C. V. Keogh, X. Guirao, W. A. Buurman, and M. Kopf, Interleukin???6 Gene???Deficient Mice Show Impaired Defense against Pneumococcal Pneumonia, The Journal of Infectious Diseases, vol.176, issue.2, pp.439-444, 1997.
DOI : 10.1086/514062

R. D. Wise, E. A. Lichter, and S. Dray, Presence in rabbit colostrum of IgA autoantibodies to a gastric antigen, J. Immunol, vol.107, pp.47-55, 1971.