Lactobacillus plantarum Promotes Drosophila Systemic Growth by Modulating Hormonal Signals through TOR-Dependent Nutrient Sensing, Cell Metabolism, vol.14, issue.3, pp.403-414, 2011. ,
DOI : 10.1016/j.cmet.2011.07.012
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data, Bioinformatics, vol.28, issue.12, pp.1647-1649, 2012. ,
DOI : 10.1093/bioinformatics/bts199
The RAST Server: Rapid Annotations using Subsystems Technology, BMC Genomics, vol.9, issue.1, p.75, 2008. ,
DOI : 10.1186/1471-2164-9-75
Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq, Methods Mol Biol, vol.1151, pp.165-188, 2014. ,
DOI : 10.1007/978-1-4939-0554-6_12
Sequence feature-based prediction of protein stability changes upon amino acid substitutions, BMC Genomics, vol.11, issue.Suppl 2, p.5, 2010. ,
DOI : 10.1186/1471-2164-11-S2-S5
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing, Journal of Computational Biology, vol.19, issue.5, pp.455-477, 2012. ,
DOI : 10.1089/cmb.2012.0021
Assessing the performance of the Oxford Nanopore Technologies MinION, Biomolecular Detection and Quantification, vol.3, issue.10, pp.1-8, 2015. ,
DOI : 10.1016/j.bdq.2015.02.001
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase, Journal of Molecular Biology, vol.94, issue.3, pp.441-448, 1975. ,
DOI : 10.1016/0022-2836(75)90213-2
The COG database: a tool for genome-scale analysis of protein functions and evolution, Nucleic Acids Research, vol.28, issue.1, pp.33-36, 2000. ,
DOI : 10.1093/nar/28.1.33
Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data, PLoS Computational Biology, vol.6, issue.4, p.1003031, 2013. ,
DOI : 10.1371/journal.pcbi.1003031.s014