D. H. Alexander, J. Novembre, and K. Lange, Fast model-based estimation of ancestry in unrelated individuals, Genome Research, vol.19, issue.9, pp.1655-1664, 2009.
DOI : 10.1101/gr.094052.109

R. A. Arenhart, M. Schunemann, B. Neto, L. Margis, R. Wang et al., are complementary transcription factors regulating aluminium responsive genes, Plant, Cell & Environment, vol.21, issue.3, pp.645-651, 2016.
DOI : 10.1111/pce.12655

A. Bettge, G. L. Rubenthaler, and Y. Pomeranz, Alveograph algorithms to predict functional properties of wheat in bread and cookie baking, Cereal Chem, vol.66, issue.2, pp.81-86, 1989.

R. Bernardo, Molecular Markers and Selection for Complex Traits in Plants: Learning from the Last 20 Years, Crop Science, vol.48, issue.5, pp.1649-1664, 2008.
DOI : 10.2135/cropsci2008.03.0131

R. Bernardo, Genomewide Selection when Major Genes Are Known, Crop Science, vol.54, issue.1, pp.68-75, 2013.
DOI : 10.2135/cropsci2013.05.0315

A. P. Bonjean and W. J. Angus, The World Wheat Book: A History of Wheat Breeding, 2001.

M. P. Calus and R. F. Veerkamp, Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM, Journal of Animal Breeding and Genetics, vol.86, issue.Suppl. 2, pp.362-368, 2007.
DOI : 10.1111/j.1439-0388.2007.00691.x

S. Chao, W. Zhang, J. Dubcovsky, and M. Sorrells, Evaluation of Genetic Diversity and Genome-wide Linkage Disequilibrium among US Wheat (L.) Germplasm Representing Different Market Classes, Crop Science, issue.3, pp.47-1018, 2007.

C. Debiton, Identification des critères du grain de blé (Triticum aestivum L.) favorables à la production de bioéthanol par l'étude d'un ensemble de cultivars et par l'analyse protéomique de lignées isogéniques waxy (Doctoral dissertation, 2010.

J. B. Endelman, Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP, The Plant Genome Journal, vol.4, issue.3, pp.250-255, 2011.
DOI : 10.3835/plantgenome2011.08.0024

A. M. Escalante, G. Coello, L. E. Eguiarte, and D. Pinero, Genetic Structure and Mating Systems in Wild and Cultivated Populations of Phaseolus coccineus and P. vulgaris (Fabaceae), American Journal of Botany, vol.81, issue.9, 1994.
DOI : 10.2307/2445471

A. Gadaleta, D. Nigro, A. Giancaspro, and A. Blanco, The glutamine synthetase (GS2) genes in relation to grain protein content of durum wheat, Functional & Integrative Genomics, vol.53, issue.7, pp.665-670, 2011.
DOI : 10.1007/s10142-011-0235-2

L. Z. Gao, S. Ge, and D. Y. Hong, Low levels of genetic diversity within populations and high differentiation among populations of a wild rice, Oryza granulata Nees et Arn. ex Watt., from China. International Journal of Plant Sciences, vol.161, issue.4, pp.691-697, 2000.

&. Shelton and D. R. , Seeding rate and genotype effect on agronomic performance and enduse quality of winter wheat, Crop Science, vol.42, issue.3, pp.827-832, 2002.

J. Goudet, hierfstat, a package for r to compute and test hierarchical F-statistics, Molecular Ecology Notes, vol.52, issue.3, pp.184-186, 2005.
DOI : 10.1111/j.1471-8286.2004.00828.x

G. Cyril, Analyse génétique de critères de qualtié en panification française chez le blé tendre, thèse de doctorat, Ressources génétiques et amélioration des plantes, 2011.

D. Habier, R. L. Fernando, K. Kizilkaya, and D. J. Garrick, Extension of the bayesian alphabet for genomic selection, BMC Bioinformatics, vol.12, issue.1, 2011.
DOI : 10.3168/jds.2008-1514

C. R. Henderson, Best Linear Unbiased Estimation and Prediction under a Selection Model, Biometrics, vol.31, issue.2, pp.423-447, 1975.
DOI : 10.2307/2529430

W. Hu, C. Huang, X. Deng, S. Zhou, L. Chen et al., , a transcription factor gene in wheat, confers drought stress tolerance in transgenic tobacco, TaASR1, a transcription factor gene in wheat, confers drought stress tolerance in transgenic tobacco, pp.1449-1464, 2013.
DOI : 10.1111/pce.12074

J. Isidro, J. L. Jannink, D. Akdemir, J. Poland, N. Heslot et al., Training set optimization under population structure in genomic selection, Theoretical and applied genetics, pp.145-158, 2015.
DOI : 10.1007/s00122-014-2418-4

Y. Q. Jia, V. Masbou, T. Aussenac, J. L. Fabre, and P. Debaeke, Effects of nitrogen fertilization and maturation conditions on protein aggregates and on the breadmaking quality of Soissons, a common wheat cultivar, Cereal chemistry, vol.73, issue.1, pp.123-130, 1996.

E. Johansson, M. L. Prieto-linde, and J. Ö. Jönsson, Effects of Wheat Cultivar and Nitrogen Application on Storage Protein Composition and Breadmaking Quality, Cereal Chemistry, vol.78, issue.1, pp.19-25, 2001.
DOI : 10.1094/CCHEM.2001.78.1.19

S. Lê, J. Josse, and F. Husson, FactoMineR: An R Package for Multivariate Analysis, Journal of Statistical Software, vol.25, issue.1, pp.1-18, 2008.

J. Li and L. Ji, Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix, Heredity, vol.62, issue.3, pp.95-221, 2005.
DOI : 10.1002/1098-2272(200012)19:4<323::AID-GEPI4>3.0.CO;2-5

E. S. Mcfadden and E. R. Et-sears, THE ORIGIN OF TRITICUM SPELTA AND ITS FREE-THRESHING HEXAPLOID RELATIVES*, Journal of Heredity, vol.37, issue.3, pp.81-91, 1946.
DOI : 10.1093/oxfordjournals.jhered.a105590

T. Meuwissen, B. Hayes, and M. Goddard, Prediction of total genetic value using genomewide dense marker maps, Genetics, vol.157, pp.1819-1848, 2001.

M. R. Perretant, T. Cadalen, G. Charmet, P. Sourdille, P. Nicolas et al., QTL analysis of bread-making quality in wheat using a doubled haploid population, TAG Theoretical and Applied Genetics, vol.100, issue.8, pp.100-1167, 2000.
DOI : 10.1007/s001220051420

URL : https://hal.archives-ouvertes.fr/hal-00964230

J. K. Pritchard, M. Stephens, N. A. Rosenberg, and P. Donnelly, Association Mapping in Structured Populations, The American Journal of Human Genetics, vol.67, issue.1, pp.170-181, 2000.
DOI : 10.1086/302959

S. Purcell, B. Neale, K. Todd-brown, L. Thomas, M. A. Ferreira et al., PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses, The American Journal of Human Genetics, vol.81, issue.3, pp.81-559, 2007.
DOI : 10.1086/519795

P. Roussel and . Paris, Contribution à la normalisation et à la codification des essais de panification et des critères d'appréciation de la valeur boulangère, 1989.

P. Shewry, Wheat, Journal of Experimental Botany, vol.60, issue.6, p.1537, 2009.
DOI : 10.1093/jxb/erp058

URL : https://hal.archives-ouvertes.fr/hal-00964145

B. D. Singh and A. K. Singh, Marker-assisted plant breeding: principles and practices, 2015.
DOI : 10.1007/978-81-322-2316-0

A. Surget and C. Barron, Histologie du grain de blé, pp.3-7, 2005.

J. C. Whittaker, R. Thompson, and M. C. Denham, Marker-assisted selection using ridge regression, Genetical research, issue.02, pp.75-249, 2000.

Y. Xu and J. H. Crouch, Marker-Assisted Selection in Plant Breeding: From Publications to Practice, Crop Science, vol.48, issue.2, pp.391-407, 2008.
DOI : 10.2135/cropsci2007.04.0191

J. Yu, G. Pressoir, W. H. Briggs, I. V. Bi, M. Yamasaki et al., A unified mixed-model method for association mapping that accounts for multiple levels of relatedness, Nature Genetics, vol.2, issue.2, pp.203-208, 2006.
DOI : 10.1038/ng1702

. Arvalis, Qualité boulangère des blés français : à l'entrée des silos de collecte, p.3, 2015.

F. Agrimer, Céréales, http://www.franceagrimer.fr/filiere-grandes-cultures/Cereales, 2016.