57 2. Identification par assignation phylogénétique basée sur la séquence du gène rpoB, p.59 ,
62 4. Identification par assignation phylogénétique basée sur la séquence du gène gyrB, p.63 ,
Klebsiella: a long way to go towards understanding this enigmatic jet-setter. F1000Prime Rep [Internet]. 1 août 2014 [cité 1 sept 2015];6. Disponible sur, Podschun R, Ullmann U. Klebsiella spp. as Nosocomial Pathogens: Epidemiology, Taxonomy, Typing Methods, and Pathogenicity Factors, pp.589-603, 1998. ,
Method for differentiating Klebsiella planticola and Klebsiella terrigena from other Klebsiella species, J Clin Microbiol. avr, vol.32, issue.4, pp.1121-1123, 1994. ,
Identification of Clinical Isolates of Indole-Positive and Indole-Negative Klebsiella spp., Journal of Clinical Microbiology, vol.44, issue.10, pp.3640-3646, 2006. ,
DOI : 10.1128/JCM.00940-06
Sequencing of 16S rDNA of Klebsiella: taxonomic relations within the genus and to other Enterobacteriaceae, International Journal of Medical Microbiology, vol.292, issue.7-8, pp.7-8495, 2003. ,
DOI : 10.1078/1438-4221-00228
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: usefulness for taxonomy and epidemiology, Clinical Microbiology and Infection, vol.16, issue.11, pp.1626-1656, 2010. ,
DOI : 10.1111/j.1469-0691.2010.03364.x
Differentiation of Raoultella ornithinolytica/planticola and Klebsiella oxytoca clinical isolates by matrix-assisted laser desorption/ionization-time of flight mass spectrometry, Diagnostic Microbiology and Infectious Disease, vol.75, issue.4, pp.431-434, 2013. ,
DOI : 10.1016/j.diagmicrobio.2012.12.009
Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.51, issue.3, pp.925-957, 2001. ,
DOI : 10.1099/00207713-51-3-925
Bergey's Manual® of Systematic Bacteriology, pp.685-93 ,
Bruxelles: De Boeck; 2013. 1184 p. 11 Bactériologie médicale: Techniques usuelles -François Denis ,
Précis de bactériologie clinique. Éd. ESKA, 2007. ,
Le scl??rome trach??al et le rhinoscl??rome, Revue de Pneumologie Clinique, vol.63, issue.2, pp.115-123, 2007. ,
DOI : 10.1016/S0761-8417(07)90112-1
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology, Int J Syst Evol Microbiol. 1 mai, vol.52, issue.3, pp.1043-1050, 2002. ,
Differentiation of the Oxytocum Group from Klebsiella by Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization, International Journal of Systematic Bacteriology, vol.24, issue.4, pp.402-409, 1974. ,
DOI : 10.1099/00207713-24-4-402
Nosocomial infection and colonization by Klebsiella trevisanii, J Clin Microbiol. mai, vol.23, issue.5, pp.948-50, 1986. ,
Klebsiella ornithinolytica sp. nov., formerly known as ornithine-positiveKlebsiella oxytoca, Current Microbiology, vol.126, issue.4, pp.201-207 ,
DOI : 10.1007/BF01570291
Biochemical identification of new species and biogroups of Enterobacteriaceae isolated from clinical specimens, J Clin Microbiol. janv, vol.21, issue.1, pp.46-76, 1985. ,
Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases, Clinical Microbiology Reviews, vol.17, issue.4, pp.840-62, 2004. ,
DOI : 10.1128/CMR.17.4.840-862.2004
Analysis of the 16S-23S rRNA Gene Internal Transcribed Spacer Region in Klebsiella Species, Journal of Clinical Microbiology, vol.46, issue.11, pp.3555-63, 2008. ,
DOI : 10.1128/JCM.00927-08
16S rRNA Gene Sequencing for Bacterial Identification in the Diagnostic Laboratory: Pluses, Perils, and Pitfalls, Journal of Clinical Microbiology, vol.45, issue.9, pp.2761-2765, 2007. ,
DOI : 10.1128/JCM.01228-07
Ribosomal RNA: a key to phylogeny, FASEB J Off Publ Fed Am Soc Exp Biol. janv, vol.7, issue.1, pp.113-136, 1993. ,
Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories, Clinical Microbiology and Infection, vol.14, issue.10, pp.908-942, 2008. ,
DOI : 10.1111/j.1469-0691.2008.02070.x
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, vol.206, issue.5, Nov., pp.111-131, 1980. ,
DOI : 10.1007/BF01731581
Numerical Classification of the Tribe Klebsielleae, Journal of General Microbiology, vol.66, issue.3, pp.279-95, 1971. ,
DOI : 10.1099/00221287-66-3-279
Differentiation of Enterobacter aerogenes from Klebsiellae by Deoxyribonucleic Acid Reassociation, International Journal of Systematic Bacteriology, vol.22, issue.4, pp.193-200, 1972. ,
DOI : 10.1099/00207713-22-4-193
Recent advances in studies of evolutionary relationships between proteins and nucleic acids, Space Life Sciences, vol.347, issue.4, pp.469-90, 1969. ,
DOI : 10.1007/BF00924238
sequence analysis as a novel basis for bacterial identification, Molecular Microbiology, vol.26, issue.5, pp.1005-1016, 1997. ,
DOI : 10.1046/j.1365-2958.1997.6382009.x
ICB database: the gyrB database for identification and classification of bacteria, Nucleic Acids Research, vol.29, issue.1, p.344, 2001. ,
DOI : 10.1093/nar/29.1.344
Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.51, issue.3, pp.915-939, 2001. ,
DOI : 10.1099/00207713-51-3-915
Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism, Research in Microbiology, vol.155, issue.1, pp.17-23, 2004. ,
DOI : 10.1016/j.resmic.2003.09.011
Raoultella electrica sp. nov., isolated from anodic biofilms of a glucose-fed microbial fuel cell, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.64, issue.Pt 4 ,
DOI : 10.1099/ijs.0.058826-0
The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol. juill, vol.4, issue.4, pp.406-431, 1987. ,
Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder, Current Microbiology, vol.146, issue.1, pp.72-80, 2013. ,
DOI : 10.1007/s00284-012-0245-x
Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.64, issue.Pt 9, pp.3146-52, 2014. ,
DOI : 10.1099/ijs.0.062737-0
Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae, PLoS ONE, vol.55, issue.11, p.113539, 2014. ,
DOI : 10.1371/journal.pone.0113539.s003
Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization Disponible sur: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656620/ 40, PLoS ONE [Internet], vol.254, issue.3, 1999. ,
Regulator of the mucoid phenotype A gene increases the virulent ability of extended-spectrum beta-lactamaseproducing serotype non-K1/K2 Klebsiella pneumonia Klebsiella pneumoniae: selected virulence factors that contribute to pathogenicity, J Microbiol Immunol Infect Infect Control IC. févr, vol.436, issue.2, pp.75-82, 1985. ,
Fine structures of the capsules of Klebsiella pneumoniae and Escherichia coli K1., Journal of Bacteriology, vol.170, issue.10, pp.4960-4962, 1988. ,
DOI : 10.1128/jb.170.10.4960-4962.1988
Isolation of a Bacteriophage Specific for a New Capsular Type of Klebsiella pneumoniae and Characterization of Its Polysaccharide Depolymerase, PLoS ONE, vol.57, issue.8 ,
DOI : 10.1371/journal.pone.0070092.s002
The role of the O and K antigens in determining the resistance of Klebsiella aerogenes to serum killing and phagocytosis, J Gen Microbiol. juill, vol.46129, issue.7, pp.2181-91, 1983. ,
Klebsiella pneumoniae Genotype K1: An Emerging Pathogen That Causes Septic Ocular or Central Nervous System Complications from Pyogenic Liver Abscess, Clinical Infectious Diseases, vol.45, issue.3, pp.284-93, 2007. ,
DOI : 10.1086/519262
Characteristics of Bacteremia Between Community-Acquired and Nosocomial Klebsiella pneumoniae Infection, Archives of Internal Medicine, vol.162, issue.9, pp.1021-1028, 2002. ,
DOI : 10.1001/archinte.162.9.1021
Association between Staphylococcus aureus strains carrying gene for Panton-Valentine leukocidin and highly lethal necrotising pneumonia in young immunocompetent patients. Lancet. 2 mars, Hypervirulent (hypermucoviscous) Klebsiella pneumoniae. Virulence. 15 févr, pp.753-9107, 2002. ,
Hypervirulent Klebsiella pneumoniae: the next superbug? Future Microbiol, pp.669-71, 2012. ,
Clonal Groups, Emerging Infectious Diseases, vol.20, issue.11, pp.1812-1832, 2014. ,
DOI : 10.3201/eid2011.140206
URL : https://hal.archives-ouvertes.fr/pasteur-01118613
Proteinaceous Bacterial Adhesins and Their Receptors, CRC Critical Reviews in Microbiology, vol.246, issue.3, pp.229-60, 1983. ,
DOI : 10.3109/10408418209113564
THE STRUCTURE, FUNCTION, SYNTHESIS AND GENETIC CONTROL OF BACTERIAL PILI AND A MOLECULAR MODEL FOR DNA AND RNA TRANSPORT IN GRAM NEGATIVE BACTERIA*, Transactions of the New York Academy of Sciences, vol.5, issue.8 Series II ,
DOI : 10.1111/j.2164-0947.1965.tb02342.x
Effect of piliation on Klebsiella pneumoniae infection in rat bladders, Infect Immun. nov, vol.30, issue.2, pp.554-61, 1980. ,
Evidence that in vitro adherence of Klebsiella pneumoniae to ciliated hamster tracheal cells is mediated by type 1 ,
Enterobacterial fimbriae., Journal of Bacteriology, vol.169, issue.3, pp.934-942, 1987. ,
DOI : 10.1128/jb.169.3.934-938.1987
Type 3 fimbriae of Klebsiella sp.: molecular characterization and role in bacterial adhesion to plant roots, J Bacteriol. août, vol.155, issue.2, pp.860-865, 1983. ,
Adherence to respiratory epithelia by recombinant Escherichia coli expressing Klebsiella pneumoniae type 3 fimbrial gene products Binding of the type 3 fimbriae of Klebsiella pneumoniae to human endothelial and urinary bladder cells, Infect Immun. avr Infect Immun. avr, vol.6065, issue.44, pp.1577-881546, 1992. ,
Role of Klebsiella pneumoniae Type 1 and Type 3 Fimbriae in Colonizing Silicone Tubes Implanted into the Bladders of Mice as a Model of Catheter-Associated Urinary Tract Infections, Infection and Immunity, vol.81, issue.8, pp.3009-3026, 2013. ,
DOI : 10.1128/IAI.00348-13
and type 3 fimbriae: nosocomial infection, regulation and biofilm formation, Future Microbiology, vol.7, issue.8, pp.991-1002, 2012. ,
DOI : 10.2217/fmb.12.74
The Major Surface-Associated Saccharides of Klebsiella pneumoniae Contribute to Host Cell Association Disponible sur Klebsiella pneumoniae Peptidoglycan-Associated Lipoprotein and Murein Lipoprotein Contribute to Serum Resistance, Antiphagocytosis, and Proinflammatory Cytokine Stimulation, Microbiol Rev. mars PLoS ONE [Internet]. J Infect Dis, vol.473208, issue.6610, pp.46-831580, 1983. ,
Lipopolysaccharide O1 Antigen Contributes to the Virulence in Klebsiella pneumoniae Causing Pyogenic Liver Abscess Disponible sur: http://www.ncbi.nlm.nih.gov/pmc Structural analysis of the core region of the lipopolysaccharides from eight serotypes of Klebsiella pneumoniae, PLoS ONE Carbohydr Res. oct, vol.7335, issue.684, pp.291-297, 2001. ,
Role of Iron in Bacterial Infection, Curr Top Microbiol Immunol, vol.80, pp.1-35, 1978. ,
DOI : 10.1007/978-3-642-66956-9_1
Iron and virulence in the family Enterobacteriaceae Enterobacterial chelators of iron: their occurrence, detection, and relation to pathogenicity, Crit Rev Microbiol. J Med Microbiol. nov, vol.168, issue.24, pp.81-111477, 1975. ,
Correlation of the virulence of Klebsiella pneumoniae K1 and K2 with the presence of a plasmid encoding aerobactin, Infect Immun. déc, vol.54, issue.3, pp.603-611, 1986. ,
Microbial iron-chelators and their action on Klebsiella infections in the skin of guinea-pigs, Br J Exp Pathol. avr, vol.59, issue.2, pp.137-184, 1978. ,
Klebsiella Pulmonary Infections: Occurrence at One Medical Center and Review, Clinical Infectious Diseases, vol.12, issue.4, pp.672-82, 1990. ,
DOI : 10.1093/clinids/12.4.672
Occurrence and species distribution of Klebsiella isolates: A case study at Komfo Anokye Teaching Hospital (KATH) in Ghana, Adv Appl Sci Res, vol.2, pp.187-93, 2011. ,
Concerning Friedländer, Gram and the Etiology of Lobar Pneumonia, an Historical Note, Trans Am Clin Climatol Assoc, vol.71, pp.142-151, 1960. ,
Community-Acquired Klebsiella pneumoniae Bacteremia: Global Differences in Clinical Patterns, Emerging Infectious Diseases, vol.8, issue.2, pp.160-166, 2002. ,
DOI : 10.3201/eid0802.010025
Identification and antimicrobial susceptibility of 100 ,
Laryngeal Scleroma Associated with Klebsiella pneumoniae subsp. ozaenae, Journal of Clinical Microbiology, vol.43, issue.11, pp.5811-5814, 2005. ,
DOI : 10.1128/JCM.43.11.5811-5813.2005
Primary Atrophic Rhinitis: A Clinical Profile, Microbiological and Radiological Study, ISRN Otolaryngology, vol.105, issue.12, 2012. ,
DOI : 10.1017/S002221510800399X
Disponible sur: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3671697/ 82 Effect of Klebsiella Ozaenae on Ciliary Activity In Vitro: Implications in the Pathogenesis of Atrophic Rhinitis. Otolaryngol--Head Neck Surg Off J Am Acad Otolaryngol-Head Neck Surg, pp.207-218, 1990. ,
Infections caused by Klebsiella ozaenae: a changing disease spectrum, J Clin Microbiol. oct, vol.8, issue.4, pp.413-421, 1978. ,
[Laryngeal subglottic localization of rhinoscleroma]. J Fr Oto-Rhino-Laryngol Audiophonol Chir Maxillo-Faciale, pp.319-321, 1979. ,
Laryngotracheal Manifestations of Rhinoscleroma, Annals of Otology, Rhinology & Laryngology, vol.95, issue.5, pp.336-376, 1996. ,
DOI : 10.1177/000348949610500502
Klebsiella variicola, A Novel Species with Clinical and Plant-Associated Isolates, Systematic and Applied Microbiology, vol.27, issue.1, pp.27-35, 2004. ,
DOI : 10.1078/0723-2020-00261
Fatal sepsis caused by an unusual Klebsiella species that was misidentified by an automated identification system):801-3. 89. Berry GJ, Loeffelholz MJ, Williams-Bouyer N. An Investigation into Laboratory Misidentification of a Bloodstream Klebsiella variicola Infection, J Med Microbiol. 1 mai J Clin Microbiol. août, vol.6253, issue.58, pp.2793-2797, 2013. ,
Nosocomial and antibiotic-associated diarrhoea caused by organisms other than Clostridium difficile, International Journal of Antimicrobial Agents, vol.33, issue.1, pp.37-41, 2009. ,
DOI : 10.1016/S0924-8579(09)70015-9
Molecular identification of coliform bacteria from colicky breastfed infants, Acta Paediatrica, vol.14, issue.10, pp.1582-1590, 2009. ,
DOI : 10.1111/j.1651-2227.2009.01419.x
Disponible sur: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109914/ 93 Pleural empyema caused by Klebsiella oxytoca: A case series, PLoS ONE [Internet]. 24 juill 2014, pp.507-516, 2015. ,
in Antibiotic???Associated Diarrhea, Clinical Infectious Diseases, vol.47, issue.9, pp.74-82, 2008. ,
DOI : 10.1086/592074
Epidemiology of Klebsiella oxytoca-Associated Diarrhea Detected by Simmons Citrate Agar Supplemented with Inositol, Tryptophan, and Bile Salts, Journal of Clinical Microbiology, vol.50, issue.5, pp.1571-1580, 2012. ,
DOI : 10.1128/JCM.00163-12
Genotypes of Klebsiella oxytoca Isolates from Patients with Nosocomial Pneumonia Are Distinct from Those of Isolates from Patients with Antibiotic-Associated Hemorrhagic Colitis, Journal of Clinical Microbiology, vol.52, issue.5, pp.1607-1623, 2014. ,
DOI : 10.1128/JCM.03373-13
Phylogenetic evidence for reclassification of Calymmatobacterium granulomatis as Klebsiella granulomatis comb. nov., International Journal of Systematic Bacteriology, vol.49, issue.4, pp.1695-700, 1999. ,
DOI : 10.1099/00207713-49-4-1695
Phylogenetic analysis of Calymmatobacterium granulomatis based on 16S rRNA gene sequences, Journal of Medical Microbiology, vol.48, issue.9, pp.841-848, 1999. ,
DOI : 10.1099/00222615-48-9-841
Studies on Granuloma Inguinale. V. Isolation of Bacterium resembling Donovania granulomatis from the Faeces of a Patient with Granuloma Inguinale., Sexually Transmitted Infections, vol.38, issue.2, pp.99-102, 1962. ,
DOI : 10.1136/sti.38.2.99
Donovanosis (granuloma inguinale), Sexually Transmitted Infections, vol.82, issue.suppl_4, pp.21-23, 2006. ,
DOI : 10.1136/sti.2006.023135
Donovanose, EMC - Maladies Infectieuses, vol.1, issue.1, pp.2-9, 2004. ,
DOI : 10.1016/j.emcmi.2004.01.001
Occurrence and diversity of integrons and ??-lactamase genes among ampicillin-resistant isolates from estuarine waters, Research in Microbiology, vol.157, issue.10, pp.938-985, 2006. ,
DOI : 10.1016/j.resmic.2006.09.003
Enteric Fever-Like Syndrome Caused by Raoultella ornithinolytica (Klebsiella ornithinolytica), Journal of Clinical Microbiology, vol.47, issue.3, pp.868-877, 2009. ,
DOI : 10.1128/JCM.01709-08
Klebsiella pneumoniae Produces No Histamine: Raoultella planticola and Raoultella ornithinolytica Strains Are Histamine Producers, Applied and Environmental Microbiology, vol.68, issue.7, pp.3462-3468, 2002. ,
DOI : 10.1128/AEM.68.7.3462-3466.2002
Emergence of Raoultella ornithinolytica on O'ahu: A Case of Community-acquired R. ornithinolytica Urinary Tract Infection, Hawaii J Med Public Health J Asia Pac Med Public Health. mai, vol.74, issue.5, pp.174-179, 2015. ,
Low virulence? Clinical characteristics of Raoultella planticola bacteremia, Infection, vol.122, issue.5, pp.899-904, 2014. ,
DOI : 10.1007/s15010-014-0664-7
A rare human infection of Raoultella ornithinolytica in a diabetic foot lesion, Ann Saudi Med. févr, vol.31, issue.1, pp.93-97, 2011. ,
Clinical characteristics of Raoultella ornithinolytica bacteremia, Infection, vol.15, issue.1, pp.59-64, 2015. ,
DOI : 10.1007/s15010-014-0696-z
Clinical characteristics of Raoultella ornithinolytica bacteremia: A case series and literature review, Journal of Infection and Chemotherapy, vol.20, issue.9, pp.589-91, 2014. ,
DOI : 10.1016/j.jiac.2014.05.005
Raoultella ornithinolytica in urinary tract infections. Clinical and microbiological study of a series of 4 oncologic patients ,
Postoperative Osteomyelitis of a Distal Phalanx Caused by Raoultella ornithinolytica]. Handchir Mikrochir Plast Chir Organ Deutschsprachigen Arbeitsgemeinschaft Handchir Organ Deutschsprachigen Arbeitsgemeinschaft Mikrochir Peripher Nerven Gefasse Organ V, 2015. ,
Raoultella ornithinolytica causing fatal sepsis, The Brazilian Journal of Infectious Diseases, vol.19, issue.2, pp.230-231, 2015. ,
DOI : 10.1016/j.bjid.2014.12.010
Emerging pathogen: a case and review of Raoultella planticola, Infection, vol.58, issue.6, pp.1043-1049, 2014. ,
DOI : 10.1007/s15010-014-0638-9
Isolation of Klebsiella terrigena from Human Feces: Biochemical Reactions, Capsule Types, and Antibiotic Sensitivity, Zentralblatt f??r Bakteriologie, vol.275, issue.1, pp.73-81, 1991. ,
DOI : 10.1016/S0934-8840(11)80769-3
A Rare Case of Soft-Tissue Infection Caused by Raoultella planticola, Case Rep Med, 2010. ,
Necrotizing fasciitis involving the chest and abdominal wall caused by Raoultella planticola, BMC Infectious Diseases, vol.47, issue.12, p.59, 2012. ,
DOI : 10.1128/JCM.01502-09
A case of severe pancreatitis complicated by Raoultella planticola infection, Journal of Medical Microbiology, vol.56, issue.5, pp.696-704, 2007. ,
DOI : 10.1099/jmm.0.46889-0
Cholangitis with septic shock caused by Raoultella planticola, Journal of Medical Microbiology, vol.61, issue.3, pp.446-455, 2012. ,
DOI : 10.1099/jmm.0.032946-0
Raoultella planticola bacteraemia secondary to gastroenteritis, Clinical Microbiology and Infection, vol.19, issue.5, pp.236-243, 2013. ,
DOI : 10.1111/1469-0691.12102
Expression of putative virulence factors by clinical isolates of Klebsiella planticola, Journal of Medical Microbiology, vol.49, issue.2, pp.115-124, 2000. ,
DOI : 10.1099/0022-1317-49-2-115
Virulence for mice of Klebsiella strains belonging to the O1 group: relationship to their capsular (K) types, Infect Immun. avr, vol.40, issue.1, pp.56-61, 1983. ,
Klebsiella terrigena, a New Species from Soil and Water, International Journal of Systematic Bacteriology, vol.31, issue.2, pp.116-143, 1981. ,
DOI : 10.1099/00207713-31-2-116
Fatal endocarditis due to extended spectrum betalactamase producing Klebsiella terrigena in a liver transplant recipient, Wiener klinische Wochenschrift, vol.52, issue.3, pp.11-12385, 2007. ,
DOI : 10.1007/s00508-007-0812-5
Sepsis caused by Raoultella terrigena, JRSM Short Reports, vol.274, issue.6, p.49, 2011. ,
DOI : 10.1258/shorts.2011.010127
Evaluation of three phenotypic identification systems for clinical isolates of Raoultella ornithinolytica, Journal of Medical Microbiology, vol.60, issue.4, pp.492-501, 2011. ,
DOI : 10.1099/jmm.0.020768-0
Recommended Test Panel for Differentiation of Klebsiella Species on the Basis of a Trilateral Interlaboratory Evaluation of 18 Biochemical Tests, Journal of Clinical Microbiology, vol.42, issue.8, pp.3665-3674, 2004. ,
DOI : 10.1128/JCM.42.8.3665-3669.2004
Sequencing of 16S rDNA of Klebsiella: taxonomic relations within the genus and to other Enterobacteriaceae, International Journal of Medical Microbiology, vol.292, issue.7-8, pp.7-8495, 2003. ,
DOI : 10.1078/1438-4221-00228
Difficulties in Identifying Klebsiella Strains of Clinical Origin, Zentralblatt f??r Bakteriologie, vol.274, issue.4, pp.456-64, 1991. ,
DOI : 10.1016/S0934-8840(11)80081-2
How to identify Raoultella spp. including R. ornithinolytica isolates negative for ornithine decarboxylase? The reliability of the chromosomal bla gene, Journal of Microbiological Methods, vol.75, issue.3, pp.405-415, 2008. ,
DOI : 10.1016/j.mimet.2008.07.011
Chapter 13 -MALDI-TOF Mass Spectrometry Applied to Classification and Identification of Bacteria, Methods in Microbiology, vol.2014, pp.275-306, 2015. ,
Spectrom??trie de masse et microbiologie, Immuno-analyse & Biologie Sp??cialis??e, vol.28, issue.5-6, pp.5-6297, 2013. ,
DOI : 10.1016/j.immbio.2013.09.003
Differentiation of Raoultella ornithinolytica/planticola and Klebsiella oxytoca clinical isolates by matrix-assisted laser desorption/ionization-time of flight mass spectrometry, Diagnostic Microbiology and Infectious Disease, vol.75, issue.4, pp.431-434, 2013. ,
DOI : 10.1016/j.diagmicrobio.2012.12.009
Comparison of Bruker Biotyper Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometer to BD Phoenix Automated Microbiology System for Identification of Gram-Negative Bacilli, Journal of Clinical Microbiology, vol.49, issue.3, pp.887-92, 2011. ,
DOI : 10.1128/JCM.01890-10
Genetic, biochemical characterization and mutagenesis of the chromosomal class A ??-lactamase of Raoultella (formerly Klebsiella) terrigena, Pathologie Biologie, vol.63, issue.4-5, 2015. ,
DOI : 10.1016/j.patbio.2015.05.002
First Descriptions of blaKPC in Raoultella spp. (R. planticola and R. ornithinolytica): Report from the SENTRY Antimicrobial Surveillance Program, Journal of Clinical Microbiology, vol.47, issue.12, pp.4129-4159, 2009. ,
DOI : 10.1128/JCM.01502-09
Nosocomial pneumonia caused by carbapenem-resistant Raoultella planticola: a case report and literature review, Infection, vol.42, issue.2, pp.245-253, 2015. ,
DOI : 10.1007/s15010-015-0722-9
Disponible sur: http://www.techmicrobio.eu/documentation_fabricants/Biomerieux%20et%20API, 2015. ,
Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies., International Journal of Systematic and Evolutionary Microbiology, vol.52, issue.2, pp.531-578, 2002. ,
DOI : 10.1099/00207713-52-2-531
Phylogeny.fr: robust phylogenetic analysis for the non-specialist, Nucleic Acids Research, vol.36, issue.Web Server, pp.465-474, 2008. ,
DOI : 10.1093/nar/gkn180
URL : https://hal.archives-ouvertes.fr/lirmm-00324099
BLAST-EXPLORER helps you building datasets for phylogenetic analysis, BMC Evolutionary Biology, vol.10, issue.1, p.8, 2010. ,
DOI : 10.1186/1471-2148-10-8
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-80, 1994. ,
DOI : 10.1093/nar/22.22.4673
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis, Molecular Biology and Evolution, vol.17, issue.4, pp.540-52, 2000. ,
DOI : 10.1093/oxfordjournals.molbev.a026334
Fast computation of distance estimators, BMC Bioinformatics, vol.8, issue.1, p.89, 2007. ,
DOI : 10.1186/1471-2105-8-89